How to convert a Generic Affymetrx CEL file to Biopython compatible CEL file?
I have a *.CEL file which is obviously in generic CEL file format. To handle it more easily I would like to read it with Biopython's (CelFile.py) helper.
Is there an existing tool to convert it?
1 answer
You probably have CEL v4 files, and Biopython currently only handles v3.
See this pull request to extend Biopython which you might be able to help test? https://github.com/biopython/biopython/pull/168
Log in to answer this question.
More posts like this
-
PennCNV step1.1 error
written by jaredgichohi •
-
Getting copy number variation from .CHP files for REMBRANDT study
written by PleaseDeleteMe •
-
Using STDIN with BioPython's PDB methods
written by Joe
-
Entrez parse function failing to parse PubMed publication records
written by apiljic •
-
Local alignment in biopython
written by tinysnippets •
-
fast global amino acid alignment without db creation
written by Leszek
-
How to read Affymetrix CYCHP File
written by QVINTVS_FABIVS_MAXIMVS
-
Affymetrix Cdf - Atoms, Cells, Blocks
written by dirigible2012
-
How To Calculate Number Of Gap Windows And Their Length In A Multiple Alignment
written by Biojl
-
Biopython Reporting "Notimplementederror" When Parsing Xml Data Returned From Snp Database In Ncbi
written by Paddie •
Are you really sure you prefer pyhon over R/Bioconductor when analyzing .CEL-files?