Biopython NCBIXML Parsing - Field Parameter
Hey,
I want to extract the
<Iteration_query-def>
from my blast Output (outfmt 5). According to the source code ( http://biopython.org/DIST/docs/api/Bio.Blast.NCBIXML-pysrc.html) it should be something like
blast.query
But
NameError: name 'blast' is not defined
Is there a complete and up to date list what Parameter refers to ist field?
Best regards,
Max
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maximilian.mayerhofer •
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could it be as simple as you need a B in blast? modules are case sensetive
Nope. Just tried that.
I think we need to see more of your code to be any help.
I did a workaround. with
blast_record.query, I got the line I wanted.