Hisat2 exited with value 137
Dear all, I have some rat fastq PE data. When I used hisat2 with --very-sensitive option for alignment, it exited with value 137. I understand that is a memory issue. Does anyone know how to bypass this. I should use '--very-sensitive' parameter. Thanks a lot.
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Get more memory or use a machine with more memory, sorry to be blunt, but that's what it is. You cannot magically create more memory unless you run on a cluster and the reason was that you did not allocate enough memory via the scheduler.