More posts like this
-
Error: Encountered internal Bowtie 2 exception (#1)
written by gabriel •
-
Bowtie2 Error: reads file does not look like a FASTQ file
written by SO_Bio •
-
bowtie2 - (ERR): bowtie2-align exited with value 13
written by saifulislam99121 •
-
bowtie2 shell script
written by amitpande74 •
-
Bowtie2 align error
written by sambioinfo2018 •
-
(ERR): bowtie2-align exited with value 1
written by vahid.jj2005 •
-
align fasta files using bowtie2
written by marongiu.luigi
-
bowtie2 error while mapping the fastq files ?
written by ahsan.raza.rana •
-
to run bowtie on multiple fastq file
written by Kritika
-
error in bowtie2 alignment
written by zizigolu
Could you provide some more details,like the command you gave etc..
In addition to what Jeffin Rockey said, since you tagged this as "rna-seq", you should be warned that bowtie2 is not appropriate for RNAseq data. Use STAR or something similar instead.
Unless it's prokaryotic RNA-seq?
Yes its RNA seq from cow ...
Please use
ADD REPLYto answer to earlier comments, as such this thread remains logically structured and easy to follow.For RNA-seq alignment of eukaryotic genomes you need a spliced aligner, most recommended nowadays are STAR and HISAT2.