How to randomly extract pair reads from bam file？
How to randomly extract pair reads from bam file？
• 703 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
Tao •
•
written
by
Tao •
1 answer
see option -s of samtools view
--subsample FLOAT Keep only FLOAT fraction of templates/read pairs
--subsample-seed INT Influence WHICH reads are kept in subsampling [0]
-s INT.FRAC Same as --subsample 0.FRAC --subsample-seed INT
• 0 views
•
link
written
by
Pierre Lindenbaum
Log in to answer this question.
More posts like this
-
Extract reads based on the orientation of the mapped reads.
written by kaz0816 •
-
extract unmapped pair end read from sam files
written by Bioinfonext
-
extracting orphan reads from bam file
written by Assa Yeroslaviz
-
bbmap command to extract mapped and unmapped pair end reads
written by Bioinfonext
-
randomly subsampling a bam file three times
written by GK1610
-
How to remove a list of reads from fastq file?
written by Tao
-
How to efficiently remove a list of reads from BAM file?
written by Tao
-
how to extract the sense and antisene bam files from the single end mapping bam file?
written by wu.zhiqiang.1020 •
-
How to reduce reads in fastq, bam, bed files in a random manner?
written by trakhtenberg
-
Extracting Reads That Are Properly Paired From Bam File
written by Abhi
