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trakhtenberg
trakhtenberg
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Joined:
12.0 years ago
Last seen:
8.4 years ago
Location:
United States
Latest posts by user
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3.3K views
Upper-quartile normalization option for Cufflinks and Cuffdiff
cufflinks cuffdiff upper-quartile normalization
written by trakhtenberg trakhtenberg
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1 reply
2.6K views
total-hits-norm and compatible-hits-norm default setting different in Cufflinks and Cuffdiff
rna-seq cufflinks cuffdiff
written by trakhtenberg trakhtenberg
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Comment: C: Does upper-quartile normalization in Cuffdiff also normalizes by transcript leng
written by trakhtenberg trakhtenberg
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2 replies
2.7K views
Does upper-quartile normalization in Cuffdiff also normalizes by transcript length?
rna-seq cuffdiff upper-quartile normalization
updated by igor igor • written by trakhtenberg trakhtenberg
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1 reply
2.8K views
PWF from GOseq to adjust q-value in Cuffdiff
goseq rna-seq gene length bias
updated by Ram Ram • written by trakhtenberg trakhtenberg
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1 reply
4.3K views
GOseq and KEGG pathways analysis for mouse RNA-seq
kegg rna-seq goseq
updated by Ram Ram • written by trakhtenberg trakhtenberg
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0 replies
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Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
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0 replies
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Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
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0 replies
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Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
0 replies
0 views
Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
0 replies
0 views
Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
2 replies
0 views
Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
1 reply
0 views
Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
1 reply
0 views
Comment: Comment: how to export RNA-seq reads which mapped to genes?
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
16 replies
4.5K views
how to export RNA-seq reads which mapped to genes?
rna-seq
updated by Ram Ram • written by trakhtenberg trakhtenberg
0 votes
1 reply
3.7K views
sorting merged GTFs for Tophat/Cufflinks pipeline
gtf cufflinks
written by trakhtenberg trakhtenberg
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0 replies
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Comment: C: How to reduce reads in fastq, bam, bed files in a random manner?
written by trakhtenberg trakhtenberg
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0 replies
1.8K views
Which flagstat output categories are passed by Tophat to Cufflinks for analysis?
flagstat cufflinks tophat
updated by Ram Ram • written by trakhtenberg trakhtenberg
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Comment: C: Converting BAM to Fastq with HTSlib htscmd
written by trakhtenberg trakhtenberg
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Comment: Comment: Picard error Illegal Mate State in converting BAM to Fastq
updated by Ram Ram • written by trakhtenberg trakhtenberg
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