How to find conserved regions in a genome
Hello!
I would like to know it there is any tool to find conserved regions within a set of genomes. Basically I have to design some primers to detect a patoghen, and I would like to target a region that is conserved among different strains of this pathogen.
I was thinking that I could download the whole genome of each strain, align them and find which regions are more conserved. Is there any tool to do this?
Thank you!
1 answer
• 0 views
•
link
written
by
Pierre Lindenbaum
Log in to answer this question.
More posts like this
-
Multiplex Primer Design to Distinguish 7 Bacterial Genomes
written by dirtees •
-
Compare two very close genomes (.fasta)
written by A_heath •
-
Finding unique regions in a sequence
written by ramiro.barrantes •
-
How to identify specific region using Mauve?
written by A_heath •
-
Strain specific primers from multifasta file
written by rob •
-
Detect repeats problematic for PCR
written by mschmid
-
Is it possible to design universal primers for detection of Pseudomonas spp.?
written by Alec Watanabe
-
Designing primers to detect different fungi species from a complex soil sample
written by ser •
-
multiplex primers design software
written by polys •
-
Design Pcr Primers To Uniquely Identify A Bacterial Strain
written by Eric Normandeau
