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Map hg19 whole exome data to exon number by gene

Hi,

I have a variants list obtained from whole exome sequencing:

WES table

I would like to map the variants to the exon number (exon1, exon2, exon3, etc.) for each gene. I am using hg19.

I tried biomart, but could not find the exon number for mapping.

Appreciate your help, thanks!

whole sequencing exome mapping exon number
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updated by swbarnes2 swbarnes2 • written by SunRise2019 • SunRise2019

1 answer

Note that since genes have many transcripts, there will be no single way to number the exons in a gene.

Look for "exon rank in transcript".

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written by swbarnes2 swbarnes2

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