What factors affect p value in GWAS ?
Hi everyone,
I have a general question. What factors have a direct and indirect impact on having the high peaks in GWAS? or having high p values?
Thanks for answering my question.
snpchip
gwas
p-value
• 680 views
•
link
updated
by
jamieshah24 •
•
written
by
Star:) •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
why assortative mating can cause bias in GWAS results?
written by Star:) •Hi everyone, Do you know why assortative mating can cause bias in GWAS results? and what is bias in GWAS? means we do not find …
-
what is log –log10 in GWAS ?
written by Star:) •Hi all, I have a simple question. what is the log amount in GWAS? When we draw the manhattan plot, the y-axis shows the log …
-
GWAS and Hetrozygosity
written by Star:) •Hi everyone, I have a question. Is there a relationship between heterozygosity and GWAS manhattan plot? For example, we have two populations that have low …
-
What is the difference between covariate with fixed effect and random effect?
written by Star:) •Hi everyone, I am really confused about some concepts. I am reading papers on the subjects of mixed linear model for GWAS and variance components. …
-
Can too high of a ChIPQC RiP% be indicative of insufficient stringency in peak calling?
written by gkunz •Hello, I was trying to make sense of the RiP% value that is returned by ChIPQC. I understand that this is basically just a percentage …
-
Manhattan plot with Bayes factor
written by biosolHi everyone, I'm trying to do a Manhattan plot with my GWAS SNPs for which I've calculated Bayes factor. I've seen that people usually transform …
-
chipseq identification of enrichment of preselected genes
written by rob.costa1234I have a list of 10 genes that i want to find level of enrichment in a public data set. So I downloaded FAStq files …
-
If i am interested in a transcription factor, why would i focus on coding and non coding SNPs?
written by mesencephalon •I have recently been reading about transcription factors and SNPs and was the above question came to my mind. What kind of impact would a …
-
HPRD direct/indirect interactions
written by Natalia •Hi, does anyone know whether protein-protein interactions in HPRD are direct or indirect? As I know a lot of people treat this database as indirect. …
-
Downstream target genes expression analysis (RNA-Seq)
written by Nicolas Rosewick<p>Hi,</p> <p>I've 32 samples expression data (RNA-Seq) in which 4 of them have a specific gene that is mutated (MUT samples). I want to asses …