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Find a position in IGV when variant is giving in the format gene_name 12345-1G>A

How could I find a position when variant is giving as shown in the title. As far as I know, what I want is something like chr13:32,929,714-32,933,577.

EDIT. I use VariantValidator but it is a bit time consuming. I was wondering if there a more quicker way to do this.

igv
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updated by abedkurdi10 • abedkurdi10 • written by ManuelDB ManuelDB

1 answer

You can search by the gene name if it is included in the data, then IGV automatically will give you the position on the genome.

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written by abedkurdi10 • abedkurdi10

yes thanks! I did that but then how can I find the position in the gene. in the title I put 12345 but it is actually 6938. How can I go directly in a easy way? And it is for clinical analysis to I need to ensure that I am in the position I really want to be.

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written by ManuelDB ManuelDB

Could you please share a screenshot just to make sure I understand what you meant?

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written by abedkurdi10 • abedkurdi10

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