This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Funny name or unsublte hacker?

I was just paroosing the NCBI FTP site looking for a good way to get a taxonomic tree based on taxID's when I stubled upon "Prodigal hack" in genomes ftp://ftp.ncbi.nlm.nih.gov/genomes/ProdigalHack/

Seemed a bit odd, might make a virtual machine and go for a poke around in some spare time at some point, but was wondering if anyone knew what it is to save me the time?

ncbi

1 answer

prodigal is a well known tool for prokaryotic gene prediction.

but why is the main page have a genome called ProdigalHack? I'll send an email to info@ncbi.nlm.nih.gov and see what they say.

Amusing development in the story, I wrote to ncbi asking why that folder is there, 4 days later I got the following response:

Thank you for the report. I do not see a directory called ProdigalHack in https://ftp.ncbi.nlm.nih.gov/genomes/ Maybe we removed it? I have not heard of a problem like this. Write back if you are still seeing it there.

Sure enough, that folder is not there anymore...

And now the mirrored version is down..... the plot thickens! Edit; I have now conctacted the creator of Prodigal, currently awaiting reply

I hope, they come up with a good explanation.

Log in to answer this question.