How to detect CNV via readDepth with multiple samples

How to detect CNV via readDepth with multiple samples??

I know how to detect CNV via readDepth with single samples..

readdepth cnv

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updated 4.5 years ago by brunobsouzaa

• written 4.5 years ago by seabed0705 •

run readDepth multiple times?

in mathematics it is called "reduce the problem to the previous one"

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written 4.5 years ago by German.M.Demidov

You can try cnvkit and/or ExomeDepth... Both will work from you .bam files!

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written 4.5 years ago by brunobsouzaa

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