How to calculate all possible chromatin interactions in a given sample?
Hi All,
I am currently working on ChIAPET data of different cancer cell lines for a specific protein of interest. For the same, I am required to perform some statistical analysis which requires me to calculate all the possible chromatin interactions in each cell lines and then get a significance p-value. The observed number of chromatin interactions I have.
I am not sure how to calculate the above-mentioned total possible number of chromatin interactions in a sample. Can anyone help me with this part?
Thank you!
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kashiff007
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bioinfo89 •
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bioinfo89 •
1 answer
Use this tool for your analysis:
ChIAPoP: a new tool for ChIA-PET data analysis
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