Unrooted trees useless and can mean anything?
Hi,
What is the point of unrooted phylogenetic (cladogram) trees? Especially while performing msa as aligners can align literally anything?
Thanks
(:
msa
phylogenetics
• 545 views
•
link
written
by
Platelet Guardian •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Finding AIC using R for best DNA models and open MSA on web browser on given multisequence fasta fi…
written by Platelet Guardian •Hi, As per the title, is there any way to see AICs like MEGA does for my msa on R and open the sequences on …
-
R, msa and sequence alignment progress?
written by Platelet Guardian •Hi, I am trying to do some msa using R. ![enter image description here][1] [1]: /media/images/733b5e17-f92e-4650-bb7f-f02e80d9 When I try to use clustaW and see my …
-
Free software for primer alignment and design for pcr?
written by Platelet Guardian •Hi, Sorry for the noobie question. What are the best free software for the above? I have been using https://primer3.ut.ee/ Is there anything better that …
-
Use mesquite to make a supertree
written by Wilber0x •Has anyone used mesquite to create a supertree? I have two phylogenetic trees, one of genera, and one for a specific genus. I would like …
-
Clustering amino acids sequences to detect homologies
written by ddowlinHi all, Basic question: I am interested in clustering a group of amino acid sequences into clusters reflecting evolutionary relationships. I have a set of …
-
Finding similar trees toplogy from a thousands of newick trees
written by vicky •Hi All I have a list of 2000 newick (format) unrooted phylogentic trees of 20 species. I want to find from these 2000 trees, how …
-
Neighbor joining and unrooted tree
written by l.roca •Hi, Is the result of Neighbor joining in phylogenetic trees is always unrooted tree? Thanks
-
Multiple sequence alignment and phylogenetic analysis
written by l.roca •Hi, I have a theoretical question that puzzles me: When I am doing an MSA (Multiple Sequence Alignment) some of the algorithm builds a guide …
-
rooted tree as an input to codeml
written by RB •<p>Hi All,</p> <p>I generate my trees for codeml analysis using RAXML and used lineage-specific and site-specific models. I never changed my trees to unrooted trees …
-
Bioinformatics Tools For Rad-Seq Data
written by KashHi, I'm quite new to Bioinformatics. I have some RAD data which I need to align first and then draw phylogenetic trees. Can someone tell …