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Different alternatives for downloading GWAS summary statistics en masse
written by LauferVAHello biostars, There are many options for downloading GWAS studies. For instance, the NHGRI GWAS catalog enables access to many of the studies at the …
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News: Introduction to GWAS course (6th edition) - June, 5th-8th
written by Physalia-courses[INTRODUCTION TO GENOME-WIDE ASSOCIATION STUDIES (GWAS)][1] --- Dates: online, June, 5th-8th --- This course will introduce students, researchers and professionals to the steps needed to …
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How can NIH SRA data be more useful?
written by datanerdHi all, SRA datasets has a lot of useful and reusable data for researchers. But some of them might be the ones that never get …
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Why does GWAS Catalog mix OR and beta in the same column?
written by Juan Manuel BerrosAll associations in GWAS Catalog can be downloaded here: https://www.ebi.ac.uk/gwas/docs/file-downloads However, the Odds Ratios (ORs) from cases/controls studies and the betas from continuous phenotypes are …
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Is there a way to find the GWAS traits to a gene programmatically?
written by cmcouto.silva •Hello folks, I would like to use a gene name (*e.g. DOCK2*) or its ENSEMBL ID as input, and get as output the reported GWAS …
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News: Introduction to GWAS Workshop- Canada 9-13 September 2019
written by Physalia-coursesDear all, Physalia-courses in collaboration with Laval University (Quebec, Canada) is organizing two courses (1 - Speciation Genomics; 2- Introduction to GWAS) in Canada this …
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GWAS from case/control + family based WGS data -how to effectively use together
written by datanerdHI all, We have a GWAS from case/control run on exomechip. We also have 8 families (not necessarily trios) with affected and unaffected members whole …
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Illumina small RNAseq analysis pipeline?
written by datanerd<p>Hello Bioinformaticians,</p> <p>Iam under pressure to meet a deadline and hence have very limited time to work out a pipeline on my own. This is …
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Tool: mRNA-miRNA target data analysis and visualization
written by datanerdHi all, [Here][1] is a new tool for visualization and analysis of miRNA and mRNA dataset. Hope its useful for other researchers in the field. …
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unified genotyper targetfile
written by datanerdHI all, I have a quick question if someone can help. I am trying to use UnifiedGenotypper for variant calling, however no matter what file …