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Juan Manuel Berros
Juan Manuel Berros
Reputation:
120
Joined:
10.9 years ago
Last seen:
4.7 years ago
Location:
Buenos Aires, Argentina
Twitter:
@jmberros

Python programmer with some Rails web dev background. Nowadays, I mostly use: pandas, matplotlib, seaborn, Jupyter, MySQL, Redis, GATK suite, plink, bwa, bcftools, samtools, bedtools.

Latest posts by user
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Comment: C: Extracting the Country from a >200 sequences Genbank file
written by Juan Manuel Berros Juan Manuel Berros
3 votes
1 reply
2.0K views
Why does GWAS Catalog mix OR and beta in the same column?
gwas gwas_catalog or
updated by zhoufeng2ye • zhoufeng2ye • written by Juan Manuel Berros Juan Manuel Berros
0 votes
0 replies
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Comment: C: Plink 1.9 "File read failure" error when merging with --bmerge
written by Juan Manuel Berros Juan Manuel Berros
0 votes
1 reply
0 views
Comment: C: Concat VCFs with some shared samples
updated by Ram Ram • written by Juan Manuel Berros Juan Manuel Berros
1 vote
1 reply
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Answer: A: Concat VCFs with some shared samples
written by Juan Manuel Berros Juan Manuel Berros
1 vote
0 replies
0 views
Answer: A: Programatically retrieving CLINVAR records, with the same detail level as it is
written by Juan Manuel Berros Juan Manuel Berros
0 votes
0 replies
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Comment: C: Programatically retrieving CLINVAR records, with the same detail level as it is
written by Juan Manuel Berros Juan Manuel Berros
0 votes
0 replies
0 views
Comment: C: Searching for ClinVar entries based on SNP annotation
written by Juan Manuel Berros Juan Manuel Berros
1 vote
0 replies
2.8K views
Tool: bed_to_tabix: Download the variants from 1,000 Genomes in the regions defined in one or more BED files.
cli linux python 1000genomes
updated by Ram Ram • written by Juan Manuel Berros Juan Manuel Berros
0 votes
0 replies
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Answer: A: Extract aligned parts of sequence to reference to new file
written by Juan Manuel Berros Juan Manuel Berros
0 votes
1 reply
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Answer: A: python setup tools console_scripts with arguments
written by Juan Manuel Berros Juan Manuel Berros
2 votes
0 replies
0 views
Answer: A: Retrieve species name using taxaIDs of NCBI
written by Juan Manuel Berros Juan Manuel Berros
4 votes
2 replies
0 views
Answer: A: Extracting the Country from a >200 sequences Genbank file
written by Juan Manuel Berros Juan Manuel Berros
0 votes
1 reply
3.5K views
Can PLINK handle gzipped ped / map files?
plink ped
updated by chrchang523 chrchang523 • written by Juan Manuel Berros Juan Manuel Berros
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