Scale independence and Mean connectivity in WGCNA?
Hi,
I am trying to find the co-expression in my RNA-Seq data (Control vs Treatment) using WGCNA. But I am getting some weird plot for Scale independence and Mean connectivity and based on that how can i select the soft threshold.
Thankyou
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what is the output of
Hi Andres, My expression matrix is input_mat
You can't run wgcna with just 6 samples. You will need at least 15 samples
Thankyou so much