I am trying to run BBDuk to quality trim and filter my illumina whole genome sequences. I have used other trimming scripts before and have …

I am trying to run stats.sh from BB Map suite on my Fasta file. However, I am always receiving an error message after placing command …

Hi, I have a trouble with variant calling and need help of someone who knows GATK. In a population study, I have mapped, with BWA-MEM, …

Dear all, I'm using BBDuk from bbmap package (last version) for the trimming of RNA-seq reads. I used the below code: bbduk.sh in=file_1.fastq.gz out=trimmed_1.fastq.gz ref=/opt/BBMap/resources/adapters.fa …

Hello, I had some problem with gatk haplotypecaller, someone can help me? thats the error: Error: Could not find or load main class “-Xmx4g” my …

Hi, I am trying to run a protocol from a paper in nature, and I am stuck with this step: The commands parameters are as …

Hi, I was trying to use fastqc to check the sequencing quality of my sample. When I tried to use: "fastqc" I got error like: …

I want to test biojava with code as following: ``` import org.biojava.nbio.core.exceptions.CompoundNotFoundException; import org.biojava.nbio.core.sequence.*; public class biotest { public static void main(String[] args) throws CompoundNotFoundException …

Hi all I am trying to run **TASSEL 3.0** in my computer S.O Window 8.1x 64 bits (RAM 4GB), but I have the following error: …

<p>I downloaded Picard-1.33 and I can't seem to get it working under a unix command line. Any help in how you should start this program …