--soloFeatures Velocyto is presently not compatible with --soloType SmartSeq

I have tried with the new version of STAR (2.7.9a) for my smart-seq2 dataset, but soloFeatures Velocyto is not working. Any idea which version of STAR is working for smart-seq2 with Velocyto? how to get mRNA spliced/unspliced/ambiguous quantification?

smart-seq2 velocyto

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written 4.6 years ago by Dhanusha •

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