How to identify differential enhancers?
Deseq2 or edgeR only allow the input of reads count to identify differential regions, but I get less differential enhancer with reads count, can I use the signal from the bigwig file as input to deseq2 or edgeR to identify the differential enhancer?
• 1,766 views
•
link
updated
by
ATpoint
•
written
by
2973520704 •
•
written
by
2973520704 •
1 answer
Log in to answer this question.
More posts like this
-
Extracting Enhancer Regions from ENCODE Annotation Files
written by YamengWu •
-
Define enhancer regions
written by Faiza •
-
How to get enhancer regions
written by Faiza •
-
What is the relationship between the value of the bigwig file generated by MACS2 and the read count?
written by 2973520704 •
-
HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
written by sbrashidx •
-
How to calculate the input-subtract signal for a specific enhancer region
written by biofandd •
-
Using FeatureCounts for ChIP-seq normalised files?
written by a.rex
-
Methylation levels at specific sites
written by firatuyulur
-
Chip-Seq : how to test if several genomic regions are enriched in histone marks
written by Nicolas Rosewick
-
Bigwig To Wig On Galaxy
written by spacemorrissey
See the DiffBind or csaw documentation.
Ok, thank you very much!