Hi VG team, I’m working on constructing a pangenome graph for Anelloviridae. My goal is the following: 1. Circularize each individual genome (using vg circularize). …

When I use `vg giraffe` to align reads to a graph and generate a BAM file, is there a way to determine the positions aligned …

I'm encountering an error when converting from .gfa to .gbz, during the build of a GBWT/GBZ index from the HPRC v1.0 pangenome graph constructed with …

.gfa is a text-based file that contains the structure of a pan-genome graph. I can write a script to parse this file, but it is …

I'm trying to generate a GAF (with reference rather than node coordinates) which describes how an individual long-read maps to all the different components of …

Hi guys A quick and silly question. I'm using vg call to detect variants in data that I've mapped to a graph, but I'm wanting …

Hi all, I have a multiple sequence alignment of ~ 26000 sequences, each around 16kb. I would like to construct a vg graph of this …

Hello vg gurus, When inducing a graph from a vcf, I'd like to have the sample-threads show up in the graph as paths instead of …

Hi, What is the best way to extract the neighboring nodes of a given node ID in a VG graph? I can think of a …

I'd like to announce that we'll be using this forum as a way to provide support to users of [vg][1] and associated tools that work …