How to download Transcriptome data for differential gene expression analysis from National cancer institute GDC data portal
I want to download the transcriptome data of a particular cancer for DEG analysis.But i am unable to do that.When I get into the server i cannot found the download and desired file.So I am eagerly asked for help,so that I can able to download that easily.
• 2,268 views
•
link
updated
by
Sumit Paliwal •
•
written
by
bookorg •
•
written
by
bookorg •
2 answers
Are you talking about you don't know how to use GDC repository https://portal.gdc.cancer.gov/repository? Or just you don't know which file type can be used for DEG?
• 0 views
•
link
written
by
Zhenyu Zhang
You can look at the following resources: https://f1000research.com/articles/5-1542 https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/download_prepare.html
• 0 views
•
link
written
by
Sumit Paliwal •
Log in to answer this question.
More posts like this
-
Query regarding miRNA Expression Status
written by shrinka.genetics •
-
How o install GMDR,a software for gene gene interaction analysis ?
written by bookorg •
-
Weighted correlation network analysis (WGCNA)
written by bookorg •
-
KEGG patwhay analysis
written by bookorg •
-
Problem for converting gene symbol to entrez id
written by bookorg •
-
Problem for analysing GSEA and ORA
written by bookorg •
-
About Differential gene expression analysis
written by bookorg •
-
Salmon alignment to cancer transcriptome
written by zal4002 •
-
TCGA data set with both expression (rna seq/ microarray) and exome seq of same samples?
written by cafelumiere12
-
Download Fasta.Txt Of A Protein From Pdb Using Biojava
written by potassiumiodide0990
Not sure what exactly you are looking to do but you can also find analyzed data at https://www.cbioportal.org/
Thanks.But i want to download gene expression data of breast cancer and wanted to analyse Differentially gene expression from that.