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map files

Hi all,

I am performing imputation using IMPUTE2. the reference file is a custom genotype vcf file extracted using the b37 build. will i need to provide a different genome map file for the custom set, or can I use the 1000genome data provided by IMPUTE2? and if I have to provide a new one, can you please tell me how to do that?

thanks in advance

genome impute2 map

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written 4.7 years ago by raalsuwaidi •

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