How to obtain coordinates of genome-wide TADs (Topologically associating domains)?

Hi everyone,

Is there a database or paper /study which can provide a list of TADs distributed throughout genome in human and mouse?

Thank you

hi-c tad genome

• 717 views • link

written 4.9 years ago by Ankit 52

0 answers

No answers yet.

More posts like this

What can I do after enrichment of expression microarray?
written 3.9 years ago by Di Wu 0

Hello everyone, 1. Now I have a number of mRNA expression microarray which from blood in mouse disease model. After I analyse DEGs and function …
mouse+human cells in 10x scRNA-seq
written 4.0 years ago by Sy80 1

Hi everyone, I'm analyzing 10x scRNA-seq data generated from xenografts (mouse + human tissues). I have the following workflow to label cells as either mouse …
Getting human-specific regions of the human genome
written 5.7 years ago by arsala521 6

Hi everyone, I have a list of human genomic regions (bed file enlisting genomic coordinates). From that list I want to extract those regions which …
Is there any database or study to get the list of known imprinting control regions for Human?
written 6.3 years ago by va90 5

Hi everyone, I was wondering, is there any database or study which gathered the list of known imprinting control regions and their genomic positions in …
Conversion of human miRBase Accession/Name/Sequence to murine
written 6.7 years ago by katie.connor 0

Hi Everyone, I was hoping you could help. I have a list of differentially expressed miRs clusters in mouse. I want to apply this expression …
REACTOME and Ingenuity Pathway Analysis have inconsistent results
written 7.0 years ago by Kim 2

Hello everyone I have a lists of genes for human and mouse. For the human gene list, I previously used REACTOME (https://reactome.org/) for pathway analysis. …
GSEA with mouse RNAseq data
written 7.5 years ago by Alex Gibbs 9

Hi everyone, I have had RNAseq performed on mouse samples (12 samples, 4 groups) and have the results ready to plug into Gene Set Enrichment …
Effect of splice site mutations in mouse
written 8.2 years ago by Ankit 52

Hi everyone, I am trying to find a way to understand the effect of a splice site mutations (GT--AG or AC--CT) in mouse genome. I …
copy number of genes
written 9.8 years ago by qwzhang0601 8

I have a list of human genes, I want to check whether those genes have copy number variants in different species (e.g., human, mouse, or …
retrieving all Human Mouse between species out-paralogs
written 11.0 years ago by Moses 15

<p>Hi,</p> <p>I want to collect all the pairs of paralogous genes between human and mouse. i.e. human mouse between species out paralogs. I was able …