How to merge different VCF files
Hi everyone,
I have 2 different VCF files (v4.3) : one containing SNP and Indels and the other one containing CNVs. The latter has only the mandatory fields (CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO) while the former has also the field FORMAT and one reference genotype.
How can I merge these 2 VCF files?
Thanks in advance.
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fohim62524 •
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Elisa •
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why would you need to merge those files? what's your aim ?
We would like to annotate the variants on QCI-I. Do you suggest us to launch two separate analysis (so one for the annotation of SNP and Indels VCF file and one for the annotation of CNV VCF file) ?
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