Hi all. Need some advice on how to proceed with phylogenetics analysis. I got a fasta file with amino acid sequences from human. (There are …

Hello all, I am using MiRanda for performing miR-target predictions on some 3'UTR sequences(hsa). I don't completely understand the "scale" parameter. I guess this parameter …

<p>I am trying to find out the relative conservation of residues of a protein that interacts to another protein over other surface residues. For example, …

Hi, I'm trying to represent pair-wise conservation in the mitochondrial genome across a number of species. I want to create a diagram that looks like …

I'm currently working in a model for differentiating some kinds of SNPs according to genomic signatures presen is their contexts. One of the such signatures …

<p>Dear Biostars,</p> <p>I am trying to calculate conservation scores for overlapping sense and anti-sense pairs of transcripts. Previously I used phastcons scores from ENCODE(mm9) to …

<p>In the UCSC genome tracks, I come across many blocks of nucleotide positions that have no conservation data corresponding to them. But if I enter …

<p>I have an alignment in FASTA format and I would like to get the column wise conservation scores for each nucleotide position. So I want …

<p>Hi,</p> <p>I've downloaded "Conservation scores for alignments of 45 vertebrate genomes with Human" and "Conservation scores for alignments of primates genomes with Human" from UCSC …

<p>Are there any tools available to measure heritability of a trait in genome-wide sequencing data? Are these measures absolute or can they be combined for …