Volcano 3D plot on single cell seurat data ?
I'm currently searching for a way of using volcano3D on single cell data analyzed with Seurat. Volcano3D looks like a fun and interesting method for DE analysis representation but I don't know which is the right way to do it from a single cell seurat object? EnhancedVolcano works like a charm with DE analysis by Seurat and I wanted to know if there is a similar way to get volcano3d working with this kind of data.
This is how Volcano3D works:
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Currently searching for a solution on this Volcano3D's issue, it's working more or less thanks to Katriona Goldmann, one of the Volcano3D developpers, I'll make some few adjustements:
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What would the 3rd dimension be, after log(pvalue) and log(odds)?