Hi!
Does anyone know where ete3 evol stores the results of the likelihood ratio test (LRT), specifically the p-value? I can see the results on the command line in verbose, for example:
LRT
Null model | Alternative model | p-value
=================================================|===============================================|============ M1~7b39f028f15bcf5b4b4300598f79fe3b | M2~59732ae49e13dec10b5e06c9a439ebdb | 0.000026**
However, i've searched every file in the output directory 'results' and cannot find the LRT results anywhere (specifically the p-value of the LRT test).
Here is the command i'm using to run it:
ete3 evol -t tree.nw --alg tree_used_alg.fa -o results/ --models M1 M2 --image figure.pdf
Thanks!
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mnsp088 •
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It seems simple enough to redirect the screen output into a file and save your p-value rather than trying to find if any file has it already.