exceRpt miRNA pipeline for paired-end RNA-seq data
Hello.
I am trying to count miRNAs using exceRpt pipeline (using Genbree, not Docker because it dosen't work).
I could count miRNA expressions in single-read RNA-seq data.
Do you know how to count paired-end RNA-seq data?
Thank you for reading!
• 1,437 views
•
link
written
by
Hirofumi •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
miRNA-seq Analysis: Is a low percentage of assigned reads normal when using a miRBase gff file for …
written by Sib •
-
sc-RNA seq DATA
written by Researcher •
-
Docker image exceRpt pipeline help
written by enh •
-
Small RNA data analysis
written by jkkbuddika
-
fastq dump usage of microRNA-seq data
written by K.patel5 •
-
Can NanoString ncounter miRNA data be analyzed with RNA-Seq tools?
written by myguestp •
-
Is it possible to identify primary miRNA from scRNA seq?
written by boting.m.ning •
-
Ribo-seq couts are more than RNA-seq count
written by Rahul Sharma
-
differential expression analysis-- paired-end and single-end
written by Jennifer •
-
tophat running problem: no input BAM records found.
written by poonam.bi01 •
miRNAs are really short sequences, mature mirnas are ~22 nucleotides long, precursors are ~70pb. I don't think that it is possible to count miRNAs from paired-end RNAseq.
Thank you for reply, Buffo!
I was wondering if it could be analyzed using NCBI GEO's paired-end public data.
I got it now.