How to use MACS2 output for DESEQ2 differential analysis during ATAC-seq? How to get the intersect?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
MACS2 “0 reads have been read” error after alignmentSieve in ATAC-seq Nextflow pipeline (single-end)
written by DdogBoss •
-
Best way to combine biological replicate peaks?
written by SpartanII •
-
Producing ATAC count matrix for multiple samples
written by jamescook365 •
-
How to import a BED file to ChIPseeker in order to visualize genome coverage plot?
written by mrj •
-
How can I export raw count profile from DiffBind to be analyzed on DESeq2 separately?
written by mrj •
-
How to perform DESEQ2 analysis when there are three treatments (one of them being a reference)?
written by mrj •
-
MACS2 option for ATAC seq?
written by star
-
Using featureCounts and DESeq2 to look at differences between ATAC-seq conditions.
written by a.rex
-
Using MACS2 for peak calling
written by anais1396 •
-
ATAC data analysis
written by 1769mkc
Take a look at the DiffBind R package (which internally uses
DESeq2, oredgeR), the tutorial vignette is quite extensive.Thank you so much!