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Are BLAST search parameters recorded in the XML file?

Hi, I have XML files from BLASTn searches but I'm not sure what, if any, parameters were selected. Would this be recorded in the file? I'm specifically interested in if a different "Max target sequences" was selected. How might I find this in the file?

blastn blast
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updated by GenoMax GenoMax • written by dacosta • dacosta

1 answer

I think the answer is no, if you are referring to NCBI Web blast. Only the following parameters are recorded in result XML.

<Parameters>
<Parameters_expect>0.05</Parameters_expect>
<Parameters_sc-match>1</Parameters_sc-match>
<Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
<Parameters_gap-open>0</Parameters_gap-open>
<Parameters_gap-extend>0</Parameters_gap-extend>
<Parameters_filter>L;m;</Parameters_filter>
</Parameters>
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written by GenoMax GenoMax

Yes, NCBI web blast. Thank you, not what I hoped to hear but those were the only parameters I saw as well!

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written by dacosta • dacosta

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