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How to proceed with multiple runs ChIP-seq

Hello dear people,

I want to ask a question about multiple runs. I want to use this sample; Foxa1 ChIP-seq

but it has (also the input) multiple runs: 3 runs

I am not sure if I merge them and analyze them as one sample or proceed with them as they are replicates, and take only one.

Thank you in advance and best regards

chipsamples seqruns chipseq sequencing chipseqanalysis

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