Where is clonotypes .csv file
Hello,
I tried to analysis following datasets: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5210599, or https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5808300.
In the VDJ_Analysis: https://github.com/ucdavis-bioinformatics-training/2020-Advanced_Single_Cell_RNA_Seq/blob/master/data_analysis/VDJ_Analysis_fixed.md
It should has two files: 1. filtered_contig-annotation.csv, 2. clonotypes.csv.
Where I can find the clonotypes.csv file in https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5210599, or https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5808300.?
Thanks in advance for great help!
Best,
Yue
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