I would like to update my 43K bovine SNP map from UMD version to ARS, but I already try to update with leftover, NCBI, but don't worked... Anyone know how can I do it in R?? Any commands, packages or scripts??
I downloaded the version from Ensembl, but the INFO field shows that dbSNP_150 has been remapped to ARS-UCD1.2, so the SNP IDs aren't being annotated …
I have a plink map+ped file ("genotypes.map" and "genotypes.ped") with 43k filtered out SNPs for cow genotyped in assembly Bostaurus6 (UMD 3.1 genome assembly). I …
HI Jared or anyone. Trying to load bigSCale2 and says not available for R 3.6.1, then tried 3.6.3, then tried 4.02--same answer not available. Looked …