How to create a new file containing contigs of a certain length from another contigs file
I have generated E coli contigs using Minia which contains contigs of all lengths. I want to create a new fasta file consisting of those contigs only which are greater than 400bp in length. Is there any way to do that.
The contigs generated by Minia is a fasta file and I want another filtered fasta file containing the contigs greater than 400bp only.
1 answer
Past threads of interest: How To Filter Multi Fasta By Length??
Filter DNA sequence in FASTA file by minimum length and redirect sequences that don't meet condition to new file using python
Preferred. Any answer here should fit the bill: Remove sequences <300 bases from FASTA file
Log in to answer this question.
More posts like this
-
Sequence extraction
written by zhichusun •
-
How to plot the gap distribution of contigs wrt to reference genome
written by Ashi •
-
How to know the positions of contigs in a reference genome
written by Ashi •
-
How to create a subset from a Nanopore fast5 file?
written by shelkmike
-
Only copy multifasta files from one directory to another
written by genomes_and_MGEs •
-
How to retrieve single protein fasta file for multiple species?
written by arsilan324
-
Number of "AT" repeats in sequence greater than 500bp
written by marija •
-
Creating blast database blast+
written by jeevansai502 •
-
How to create ouput file using perl
written by vinij80 •
-
Assembly to GFF3
written by navillusol858 •
