How to create a subset from a Nanopore fast5 file?
Imagine that I have a fast5 file created by MinION which contains information for 4000 reads. I have a list of titles for, say, 1000 reads, and I want to create a new fast5 file which contains information only for those 1000 reads. How to do this?
I will be grateful for possible help.
1 answer
You can use a script from the ont-fast5-api
• 0 views
•
link
written
by
WouterDeCoster
Log in to answer this question.
More posts like this
-
Cannot process all the reads in a fast5 file?
written by Gio •
-
Extract VCF samples by ID - Help
written by X •
-
difficulty filtering vcf file with vcftools
written by Phoebe Magdy •
-
MinION data organization
written by emiliomastriani •
-
Minion device suddenly disconnected from the MinIT browser and cannot return to its process. How ca…
written by luongphe06 •
-
How to trim Nanopore reads. Please suggest a tool.
written by SUDOsundu •
-
Processing Raw Nanopore Data
written by anastasiia.satyr •
-
Phylogeny from incomplete orthogroups
written by shelkmike
-
How Many Reads In A Bam File Are Aligned To a Specific Region
written by h.rokny •
-
Extract Reads From All Chromosomes Except One.
written by KCC
Looks like
fast5_fetcher(LINK) will do what you need.ONT also has an official API.