allele balance gatk
Hi,
I am trying to calculate allele balance for both the heterozygous (.40 to .60 ) and homozygous base through vcf file.
plz let me know how to achieve it through gatk.
I tried using FilterVCF(picard) command as follows
-I inputFile.vcf --MIN_AB -O outputfile
I would really appreciate any help.
Regards,
Sabeen
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