The chromatin accessibility in regulatory regions of the rhodopsin gene RHO.

enter image description here

Currently I'm working on ATAC-Seq data analysis with different stages such as normal, early AMD and late AMD. I wanna create above figure exactly. Anyone suggest me which are input files to generate above figure.

MSS

atac-seq

• 653 views • link

updated 2.5 years ago by Ram 4.5K • | written 5.1 years ago by madhubioinform 0

0 answers

No answers yet.

More posts like this

ATAC-SEQ FRAGMENT SIZE
written 10 months ago by Irene 1

Hi! i am doing a quality check of my ATAC-seq data with Picard and i am having this peaks. This is my first time working …
Batch effect or biological difference
written 1.5 years ago by cynthier 0

Hi, I have scRNA data from two stages, and they mixed well in PCA. However, the same cell types are separated in UMAP (with only …
nanopore data analysis methylation modification
written 2.7 years ago by Domi 0

Hi all I have two sets of nanopore DNA sequencing data (experimental group and control group). Using the mCaller tool, I extracted the 6mA methylation …
how to costum the color palette for ggplot2
written 3.3 years ago by Qianjiang(QJ) Hu 1

Hi, I use the following code to get the heatmap (figureA): **My code:** ![enter image description here][1] **Figure A** ![enter image description here][2] However, I …
Does anyone know how to generate a figure of the amino acid position in protein sequence?
written 3.8 years ago by mickley413 0

Does anyone know if there is a package or online tool to generate a figure like below given any protein sequence? Thank you so much! …
Pathway Enrichment Analysis according to tumor mutation burden.
written 4.2 years ago by weiruolun 0

![enter image description here][1] [1]: /media/images/30234659-83da-4bac-bc56-08eac95f Hi, I wanna enrich associated pathway according to the value of tumor mutation burden on R, just like this …
Percentage of mitochondoria in single nuclei single cellRNASeq
written 4.3 years ago by Tania 18

Hi All Are these percentages of mitcohondoria seems normal for single nuclei/Single Cell RNASeq? What is a normal rate? Thanks ![enter image description here][1] ![enter …
how could I select low 'fraction fragments overlapping peaks' but 'high fragments per barcode' in s…
written 4.3 years ago by Chilly 129

I am doing a **single cell ATAC-seq** analysis. My data was generated using the 10x kit. Shown in the attachment is a part of the …
Can not plot degree distribution in Cytoscape Network Analyzer on logscale
written 4.9 years ago by bhodai 0

I am using Cytoscape 3.9.0. When I tried - Tools > Analyze Network, the following window poped-up ![enter image description here][1] When I clicked on …
Deseq same padj values for a lot of genes but with different p-values
written 5.4 years ago by yanyanwu 2

I used DEseq to find differentially expressed genes between two samples, for each sample i have 3 replicates, for the DEseq result, i got exactly …