More posts like this
-
Single cell
written by synat.keam 12Dear All, I will soon progress to single cell experiment. I have experince doing bulk-RNA seq including QC, alignment, performing differentially gene expression analysis, enrichment …
-
Finding mutated amino acids in a protein
written by antoniaa 3Hi all, I have a few proteins and I would like to learn whether there is a mutation in them or not. How can I …
-
Should energy minimization of native and mutant protein structures be done before RMSD calculation …
written by Anis 3I want to calculate the RMSD values between a native protein and several of its mutant structures. I did energy minimization of them by YASARA …
-
Question: How to calculate base count for each base in one spot in sam file
written by ncxhit 0Hi, I am wondering if it is possible to calculate the percentage each of the four nucleic acids holds in a certain spot in sam …
-
epitope analysis for multiple sequenes
written by d16082 0Dear all, I've downloaded the free command line version of the IEDB software to predict B cell epitopes? Does anyone know whether is it possible …
-
How to align mouse transcriptome data using bowtie2?
written by John 28Hi dear one, I have previously aligned bacterial RNA-seq with its reference genome, it has only one chromosome! But for mouse I have found the …
-
multiple B cell epitope prediction with IEDB
written by BCArg 9Dear all, I've downloaded the free command line version of the [IEDB][1] software to predict B cell epitopes. Does anyone know whether is it possible …
-
RMSD contribution from each residues
written by mun.loo12 0Hi, I am currently doing structural comparison between two isoforms of proteins. Does anybody know how can we calculate RMSD contribution of each residues using …
-
RMSD of a structural superposition
written by silvia.caprari84 5Hi, I am doing some structural comparisons with the visualization program Chimera to see similarities within a dataset of proteins. I was wondering how I …
-
Ks Calculation Help
written by Palu 29<p>Hi all, i was wondering whether it's correct to calculate calculate ks value using rice and arabidopsis genes as a pair ?? Any suggestions?</p>