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A suited tool to guide the visualization of rMATs output?

Hi guys,

I'm studying alternative splicing with rMATs. I run the software and I was searching for a tool to help the visualization and make the output comprehensive for a presentation. I have tested several packages as maser that seemed to be what I was looking for. However, it requires "geneSymbols" from ENSEMBL, and I have TAIR annotations. As I didn't manage to fake those, it limits its utilization and no other tool I tested show that fonctionnalities.

Here is my question; which tool may I use to summarise rMATs output from Arabidopsis thaliana data with TAIR annotations?

Thanks in advance,

rmats visualization
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updated by Y • Y • written by Hojn • Hojn

1 answer

To only 2 tools I found for plotting rMats output is rMats2sashimiplot and Jutils but I do want to know if there are others particularly that you can run on your HPC/local machine and not online.

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written by Y • Y

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