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How many reads does Delly use for variant calling?

Does anyone know how many reads delly uses for variant calling?

dna-seq bwa-mem delly bowtie2
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updated by archanaverma433 • archanaverma433 • written by gt • gt

1 answer

It uses the entire BAM file and requires at least 2 paired-ends or split-reads to call a variant.

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written by trausch trausch

awesome, thanks!

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written by gt • gt

actually, do you know how many freebayes uses for variant calling?

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written by gt • gt

Do we need to specify anything for haploid organism , when running Delly caller or it can detect automatically?

Thanks

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written by archanaverma433 • archanaverma433

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