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genome assembly in org.Mm.eg.db

Hi

How do I identify the genome assembly version used in the "org.Mm.eg.db " - R package.

Thanks

r
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updated by Ram Ram • written by anithaslvn • anithaslvn

1 answer

From vignette:

Mappings were based on data provided by: Entrez Gene https://ftp.ncbi.nlm.nih.gov/gene/DATA With a date stamp from the source of: 2021-Apr14

Data there is for current release of genomes. For mouse current RefSeq release is GRCm39 (LINK).

You can get the chromosome lengths and compare.

## Bimap interface:
tt <- org.Mm.egCHRLENGTHS
# Length of chromosome 1
tt["1"]
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written by GenoMax GenoMax

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