This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to tell if a region is low complexity?

Hi everyone

how to identify if the region is low complexity ? I used the genome browser in the attached image, but it seems to me it is not low complexity. I am interested in human. how do you think? need to double check my understanding.

https://ibb.co/mdeOMm

Thanks

low complexity region
• 3,555 views • link
written by Dayna • Dayna

I think it's marked as SINE sequence

• 0 views • link
written by Asaf Asaf

Thanks. So SINE region is a low complexity region, right?

• 0 views • link
written by Dayna • Dayna

As @Asaf indicated this region is covered by a SINE. Full list of repeats is here.

enter image description here

• 0 views • link
written by GenoMax GenoMax

I want to know is a SINE a low complexity as it is repeats too? I am sorry if it is a naive thing. But I am very new?

• 0 views • link
written by Dayna • Dayna

0 answers

No answers yet.

Log in to answer this question.

More posts like this