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Circular plot for RNA seq - methylation data

Hello,

could anyone suggest a program or and R package to procude ciruclar plot with genetic data?

In my specific case what I would like to plot is a ciruclar plot with RNA seq data (log2 fold change of genes) and methylation data (delta Meth of genes) A. thaliana in one plot.

I tried with "Circos" but it has a really steep learning curve; are there any alternatives out there?

Thank you!

methylome plot rnaseq
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updated by Papyrus Papyrus • written by simone.castellana • simone.castellana

1 answer

Try the R package circlize, it's got great documentation (although the learning curve may be more steep than your usual R package due all the possibilities it grants). There's also an interactive shiny app based on circlize.

Edit: the R package ggbio may be more simple; I've used it for linear plots, but it also has options for cicular plots.

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written by Papyrus Papyrus

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