Can anyone please name this tool to make a genome map?
Hi all,
I used a tool a few years ago to make a genome map, but I can't remember the name of the tool! It was an online tool if that helps?
Many thanks in advance
graphics
genome
• 2,437 views
•
link
updated
by
Ram
•
written
by
zack.saud •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
lollipop plot showing DNA sequence
written by varga.luca •Hi all! I want to make a plot like these but I can't find any tool that would allow for showing a DNA track on …
-
Forgot the web site with comparison of NGS platforms
written by konstantinkulHello, all a couple of years ago I accidentally found a github site in which the author presents a constantly updated table comparing NGS platforms …
-
Some lines are not well organized in BED file, how to correct them ? Thanks a lot !
written by Ben •A BED file was downloaded online. When I checked it, a few lines were not well organized. How can I correct them? Thanks a lot! …
-
Does anyone know how to generate a figure of the amino acid position in protein sequence?
written by mickley413 •Does anyone know if there is a package or online tool to generate a figure like below given any protein sequence? Thank you so much! …
-
Driver Phylogenetic Trees of TRACERx project
written by Vasei •There are figures depicting phylogenetic trees for different patients in the two following papers: 1. Tracking the Evolution of Non–Small-Cell Lung Cancer ![enter image description …
-
Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Abs…
written by k.kathirvel93Dear All, I have .tsv file like this with genome name (1st coloumn) and aminoacid mutations for different proteins... ![enter image description here][1] I want …
-
Easy differential expression heatmap?
written by Amy •I'm finally getting back to an RNAseq differential expression dataset I analyzed years ago and cannot remember what tool I used to generate these simple …
-
Extremely high adapter content and low alignment rate in RNAseq
written by ngs101.com![enter image description here][1] Hi guys, I recently encountered some RNAseq data with extremely high adapter content (over 90% of reads with about 50% adapter …
-
[Errno 2] No such file or directory: '0-rawreads' when I run Falcon unzip with hifi data
written by Feng •Hi all, I am running the falcon-unzip in a server, but got this error ![enter image description here][1] Here ia my fc_unzip.cfg file ![enter image …
-
What tools to use to generate these "chromothripsis" plot?
written by orangutan •Hi, I see this type of plot in many structural rearrangement papers, especially in cancer with a highly shattered genome ("chromothripsis" ). I have WGS …
unfortunately that does not help no.
You should at least provide some more info if you want to get meaningful answers ... It's quite hard for others on this forum to know what you did several years back.
The image might help ( a bit). was it a genetic map? optical map? ... Try to add as much details/info as you can.
I'm just asking for the name of the online tool if anyone recognized the tool from the image I've provided? I don't see how that's a stupid question?
it's not a stupid question, you just provide very little info to work with.
Sorry, it was a genetic map, and the tool took in a genbank file to generate the map. I'm sorry I can't provide more info, it was years ago that I used it, and all I have is the image that I'd produced. Any tool that may produce a similar graph would also be useful! Thanks :)
I know that software like AllMapsLG can also produce a similar output but not as nice I seem to remember.
Did you tried googling for it? "online tool to draw genetic map" or such?
Hi, yes, I've been googling for a week now but I cannot find it :(. This was a last ditch attempt to see if anyone could identify the website from the image.
I'll check out the AllMapsLG, thanks
did you try searching with that image?
Yes, I get a lot of hits to similar images, but none that name the tool I'd used.
what type of image it it btw?
I mean, perhaps you can have a look into it's metadata? might provide a clue or such