basespace data interpretation?

Question

[shweta.johari13]

Good afternoon,

My name is Shweta Johari. Has anyone worked with BaseSpace data? In so many files which file is the one to actually try and understand the data? Are there any tutorials on BaseSpace and RNA-Sequencing or anyone giving any lessons?

Answer 1

[GenoMax]

Illumina has training available for using BaseSpace. If you search google using basespace tutorial site:youtube.com then you can find visual tutorials.

That said the screenshot posted appears to show results of QC (multiqc report), alignments (BAM), variant calls (gvcf), target coverage (is this a targeted WES expt?). Files with excel icon should be viewable in excel. BAM file (with .bai file that goes with it) will require use of a genome browser like IGV (unless BaseSpace has an integrated browser).

[shweta.johari13]

Thank you so much for your help. I will certainly look into this. Thank you again. Have a nice day.