Does this output indicate my bam is paired end?
I have bams from the same sequence batch, trying to find out if they are paired read
as per this post
samtools view -c -f 1 in.bam
output 53178051 plugged in to this decoder, which seems to say paired read because it contains 1
Oddly, the very next sample produces 47757395
I have several hundred bam from the same batch, about half of then output the 1
Wouldn't this be unexpected if they are all from the same batch?
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