Hello, I need to extract counts of synonymous and functional variants from gnomad v.3.1 genomes https://gnomad.broadinstitute.org/downloads I already have downloaded these genomes, extracted only exomic regions, and extracted desired population (european women only)

at the moment my file looks like this:

I know, how to gen snp counts from normal VCFs (using SNPEff tool); but I wonder how to extract variant counts from a file like this

Thank you!