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my gffcompare out put gtf file is like that. on complete row is followed by some uncomplete row wich have not class codes.

my gffcompare output gtf file is like that. one complete row is followed by some uncomplete row which has not class codes. ?

NC_001711.1 StringTie   transcript  1004    16642   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; xloc "XLOC_000011"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS1";
NC_001711.1 StringTie   exon    1004    4890    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "1";
NC_001711.1 StringTie   exon    4958    6147    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "2";
NC_001711.1 StringTie   exon    6468    8018    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "3";
NC_001711.1 StringTie   exon    8094    8166    .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "4";
NC_001711.1 StringTie   exon    8181    14770   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "5";
NC_001711.1 StringTie   exon    15361   16642   .   +   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.7"; exon_number "6";
NC_001711.1 StringTie   transcript  4888    16642   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; xloc "XLOC_000002"; ref_gene_id ""; cmp_ref "unknown_transcript_1"; class_code "j"; tss_id "TSS2";
NC_001711.1 StringTie   exon    4888    4958    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "1";
NC_001711.1 StringTie   exon    6149    6291    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "2";
NC_001711.1 StringTie   exon    6329    6466    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "3";
NC_001711.1 StringTie   exon    8019    8089    .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "4";
NC_001711.1 StringTie   exon    14767   15357   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "5";
NC_001711.1 StringTie   exon    16573   16642   .   -   .   transcript_id "unknown_transcript_1"; gene_id "MSTRG.8"; exon_number "6";
NC_035077.1 StringTie   transcript  26931   49263   .   +   .   transcript_id "XM_021602508.1"; gene_id "MSTRG.1"; gene_name "LOC110523613"; xloc "XLOC_000003"; ref_gene_id "LOC110523613"; cmp_ref "XM_021602508.1"; class_code "="; tss_id "TSS3";
gffcompare rna lncrna gtf
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updated by GenoMax GenoMax • written by mtavakoli4030 • mtavakoli4030

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