How to calculate power to detect mQTLs?

Hello,

Can someone please recommend a power calculator for detecting mQTLs? In my study I will have 50 cases and 50 controls. I will be using Illumina HumanMethylationEPIC microarray BeadChip Kit.

illumina power mqtl methylation

• 850 views • link

written 5.4 years ago by anamaria

0 answers

No answers yet.

More posts like this

Looking for VCF files and clinical data for cancer (prostate or cll or breast)
written 5.4 years ago by ansakim20 •

Hello can someone please guide me about where I can obtain VCF files and clinical data for cancer (prostate or breast or call). I am …
HWE check for Cases
written 5.9 years ago by new_bee_GWAS •

Hi All, I am terribly confused if I should check for HWE in a case only study or not. There are some publication which says …
Interpretation of results from ssizeRNA power analysis
written 6.0 years ago by anamaria

I have around 200 subjects and I would like to check the power for 90 of those subjects. It is a case control study. I …
Population stratification with PLINK
written 6.1 years ago by fatma.mokhtar •

Hello, I do not have cases and controls in my sample. Can I still perform population stratification for my data using PLINK?
What software to use to asses phenotypic information from ULBiobank dataset?
written 7.1 years ago by anamaria

Hello, I got my data from UKbiobank, for 502536 subjects. I would like to determine which subjects have diabetic related complication in order to distinguish …
module membership (kME) versus NES (normalized enrichment score) from GSEA
written 7.3 years ago by anamaria

Hello, I would like to reproduce fig 4A for my data from this paper: https://science.sciencemag.org/content/359/6376/693 In Supplemental Materials in GWAS Enrichment section they say: "To …
What are the requirements to use data generated in other microarray experiments as a control?
written 8.3 years ago by Leite

Hello everyone, I was thinking, if for example I can use samples generated from **Illumina HumanHT-12 V4.0 expression beadchip** as a healthy control for samples …
merge cases and controls with plink
written 9.2 years ago by alessandrotestori7

Hello. I have a dataset of cases and a dataset of controls which have been genotyped on different platforms. So, for a particular SNP, it …
Rare variant association analysis for exome study without controls
written 10.5 years ago by mkaushal

Hello All, I am new to rare variant association analysis for exome data. The study which I am currently working on has around 120 affected …
How to Design Exome Sequencing study?
written 10.7 years ago by waqas.ahmad5231 •

I am planning to analyse exome sequencing data. I am expecting data from the platform [Illumina Infinium Human Exome-12 BeadChip][1]. I am basically statistician and …